24 July 2020>: Database Analysis
Systematic Analysis of Alternative Splicing Landscape in Pancreatic Adenocarcinoma Reveals Regulatory Network Associated with Tumorigenesis and Immune Response
Jiahua Lu 1234BCE , Shenyu Wei 5BCD , Jianying Lou 6BF , Shengyong Yin 1234DF , Lin Zhou 1234CD , Wu Zhang 78AEG* , Shusen Zheng 1234AEG*DOI: 10.12659/MSM.925733
Med Sci Monit 2020; 26:e925733
Figure 2 Profiles of 7 alternate splicing (AS) patterns and overall survival (OS)-related AS events in pancreatic ductal carcinoma (PDAC). (A) Schematic illustration of 7 AS patterns: exon skipping (ES), alternate donor site (AD), alternate acceptor site (AA), alternate promoter (AP), alternate terminator (AT), mutually exclusive exons (ME), and retained intron (RI). (B) Bar plot of counts of AS events and parent genes for the 7 AS patterns. Red bars represent OS-AS events and parent genes from univariate Cox analysis. Black and gray bars represent all AS events and corresponding parent genes in PDAC, respectively. (C) UpSet plot of intersections of the 7 patterns of AS events. One gene may have up to 4 types of AS events in the dot panel, as shown in the next to last line, which connects 4 AS events (RI, AD, AT and ES). (D) UpSet plot of intersections of the 7 patterns of OS-AS events.