24 July 2020 : Database Analysis
Systematic Analysis of Alternative Splicing Landscape in Pancreatic Adenocarcinoma Reveals Regulatory Network Associated with Tumorigenesis and Immune Response
Jiahua Lu1234BCE, Shenyu Wei5BCD, Jianying Lou6BF, Shengyong Yin1234DF, Lin Zhou1234CD, Wu Zhang78AEG*, Shusen Zheng1234AEGDOI: 10.12659/MSM.925733
Med Sci Monit 2020; 26:e925733
Figure 9 Consensus clustering based on prognosis-related alternative splicing (AS) events and immune landscape analysis. (A, B) Consensus clustering matrix and silhouette plot identifying 3 clusters. (C) Kaplan-Meier survival plot showing significant differences among the 3 clusters (log-rank t test, P<0.05). (D) Classification of pancreatic ductal carcinoma samples based on 5 immune subtypes in 3 clusters: wound healing, IFN-γ dominant, inflammatory, lymphocyte depleted, and TGF-β dominant. (E, F) Comparison of immune and stromal scores of the 3 clusters with analysis of variance. (G) Heat map of clinicopathological characteristics and gene phenotypes in the 3 clusters. Driver gene mutations, including KRAS, CDKN2A, and TP53, showed distinct distribution in the 3 clusters with chi-squared test.






