05 July 2021: Clinical Research
Identification and Characterization of Non-Coding RNAs in Thymoma
Guanglei Ji 1AE , Rongrong Ren 2BCDF , Xichao Fang 3BCDF*DOI: 10.12659/MSM.929727
Med Sci Monit 2021; 27:e929727
Table 5 lncRNAs and their predicted protein interactions using the UCSC-TFBS algorithm.
| ID | Gene Name | Species | UCSC_TFBS |
|---|---|---|---|
| 84740 | AFAP1-AS1 (AFAP1 antisense RNA 1) | AML1, AP1FJ, AP2REP, AP4, AREB6, ARNT, ARP1, CDC5, CDPCR3HD, COMP1, CP2, CREBP1, ELK1, EN1, ER, FOXJ2, FREAC7, GCNF, GRE, HAND1E47, HFH3, HNF3B, HOXA3, HTF, LYF1, MEF2, MSX1, MYCMAX, MYOD, NFAT, NFY, NKX25, NKX61, P53, PAX4, PAX5, PPARA, PPARG, RFX1, RORA2, RP58, SREBP1, SRY, TAL1BETAITF2, TAXCREB, TBP, TCF11, USF, ZIC2, ZID | |
| 401491 | VLDLR-AS1 (VLDLR antisense RNA 1) | AHRARNT, AML1, AP1, AP1FJ, AP2GAMMA, AP4, AREB6, ARNT, ATF, BACH1, BACH2, BRACH, CART1, CDC5, CDP, CDPCR1, CEBP, CEBPB, CHX10, COMP1, COUP, CP2, E47, E4BP4, EN1, ER, EVI1, FOXD3, FOXJ2, FOXO4, FREAC4, FREAC7, GATA, GATA1, GCNF, GFI1, GR, HEN1, HFH1, HFH3, HLF, HMX1, HNF1, HNF3B, HOXA3, HSF2, HTF, ISRE, LHX3, LMO2COM, LUN1, LYF1, MAX, MEF2, MEIS1, MEIS1BHOXA9, MSX1, MYCMAX, MYOD, MYOGNF1, MZF1, NCX, NF1, NFAT, NFY, NKX22, NKX25, NKX3A, NKX61, NRSF, OCT, OCT1, OLF1, P300, P53, PAX4, PAX6, PBX1, POU3F2, POU6F1, PPARA, PPARG, RORA2, RP58, RREB1, RSRFC4, S8, SOX5, SOX9, SREBP1, SRF, SRY, STAT1, STAT3, STAT5B, TAL1BETAITF2, TATA, TAXCREB, TCF11, TCF11MAFG, TGIF, USF, XBP1, YY1, ZIC1, ZID | |
| 284029 | LINC00324 (long intergenic non-protein coding RNA 324) | AP1, AP4, AREB6, ARP1, BRACH, CART1, CEBP, CETS1P54, CMYB, CP2, E47, FOXJ2, FREAC4, GATA3, GRE, HAND1E47, HEN1, HNF4, ISRE, MEF2, MZF1, NFY, OCT1, OLF1, PBX1, PPARG, RORA2, STAT3, STAT5A, TAL1BETAE47, TAL1BETAITF2, TCF11MAFG, TST1, USF, ZIC1 | |
| 729467 | HSD52 (uncharacterized LOC729467) | AP1, ARP1, BACH1, BACH2, BRACH, CEBP, CEBPB, COUP, EGR3, EVI1, FOXD3, FOXO3, FOXO4, FREAC2, GATA1, HFH1, HNF3B, IK3, IRF2, IRF7, ISRE, LUN1, MEF2, MZF1, NFAT, NFE2, NKX22, OCT, OCT1, PAX4, POU3F2, PPARG, RP58, RSRFC4, SRF, STAT, TAXCREB, TCF11MAFG, YY1 |